在Circos图外添加额外的轨道(Circlize,Chorddiagram)
我正在尝试重新创建下面的这一图,其中“到”变量(IE目标基因)进一步分为外部(标记)类别(IE受体)。
我已经生成了一些示例数据,不幸的是,我不确定其他外部类别需要哪种格式,但是它可能与链接格式相距不远。
library(circlize)
links <- data.frame(from = c("A", "B", "C", "B", "C"),
to = c("D", "E", "F", "D", "E"),
value = c(1, 1, 1, 1, 1))
categories <- data.frame(from = c("D", "E", "F", "D", "E"),
to = c("X", "X", "Y", "Y", "Y"),
value = c(1, 1, 1, 1, 1))
chordDiagram(links)
任何帮助都非常感谢!
I'm trying to recreate this figure below, where the "to" variable (i.e. target genes) is further grouped into outer (labelled) categories (i.e. receptors).
I have generated some example data, unfortunately I'm not sure what format is needed for the additional outer categories, but it's possibly not far off the link format.
library(circlize)
links <- data.frame(from = c("A", "B", "C", "B", "C"),
to = c("D", "E", "F", "D", "E"),
value = c(1, 1, 1, 1, 1))
categories <- data.frame(from = c("D", "E", "F", "D", "E"),
to = c("X", "X", "Y", "Y", "Y"),
value = c(1, 1, 1, 1, 1))
chordDiagram(links)
Any assistance greatly appreciated!
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