如何在r takexte`description'的“远程”字段中包含子目录。

Question

假设我想在我的r软件包中使用依赖性的开发版本，因为它位于某个github分支上，但另一个并发症是它位于 subdirectory 中。

例如，如果我想依靠远程喜欢下载它：

remotes::install_github("glmmTMB/glmmTMB@ci_tweaks", subdir = "glmmTMB")

如果此软件包是不是基于子目录的，我可以将以下内容包括在 Description> Description 文件中：

Remotes: glmmTMB/glmmTMB@ci_tweaks

但是我不知道如何在此处指定子目录以获取软件包。

Answer 1

您应该知道，遥控器为您创建所有需要的描述文件字段。因此，我运行远程:: install_github（“ glmmtmb/glmmtmb@ci_tweaks”，subdir =“ glmmtmb”），然后 packagedEscription（“ glmmtmb”） 。查看添加了多少个远程和GITHUB连接的备案。例如远程图：glmmtmb 也有。

> packageDescription("glmmTMB")
Package: glmmTMB
Title: Generalized Linear Mixed Models using Template Model Builder
Version: 1.1.4
Authors@R: c(person("Mollie","Brooks", comment=c(ORCID="0000-0001-6963-8326"), role =
          c("aut", "cre"), email = "[email protected]"), person("Ben","Bolker",
          role="aut", comment=c(ORCID="0000-0002-2127-0443")),
          person("Kasper","Kristensen",role="aut"), person("Martin","Maechler", role="aut",
          comment=c(ORCID="0000-0002-8685-9910")), person("Arni","Magnusson", role="aut",
          comment=c(ORCID="0000-0003-2769-6741")), person("Maeve","McGillycuddy",
          role="ctb"), person("Hans","Skaug",role="aut"), person("Anders","Nielsen",
          role="aut", comment=c(ORCID="0000-0001-9683-9262")), person("Casper","Berg",
          role="aut", comment=c(ORCID="0000-0002-3812-5269")), person("Koen","van Bentham",
          role="aut"), person("Nafis","Sadat",role="ctb",
          comment=c(ORCID="0000-0001-5715-616X")), person("Daniel","Lüdecke", role="ctb",
          comment=c(ORCID="0000-0002-8895-3206")), person("Russ","Lenth", role="ctb"),
          person("Joseph", "O'Brien", role = "ctb", comment = c(ORCID =
          "0000-0001-9851-5077")), person("Charles J.","Geyer", role="ctb"),
          person("Mikael","Jagan", role="ctb", comment = c(ORCID = "0000-0002-3542-2938")),
          person("Brenton", "Wiernik", role="ctb", comment = c(ORCID =
          "0000-0001-9560-6336")) )
Description: Fit linear and generalized linear mixed models with various extensions,
          including zero-inflation. The models are fitted using maximum likelihood
          estimation via 'TMB' (Template Model Builder). Random effects are assumed to be
          Gaussian on the scale of the linear predictor and are integrated out using the
          Laplace approximation. Gradients are calculated using automatic differentiation.
License: AGPL-3
Depends: R (>= 3.2.0)
Imports: methods, TMB (>= 1.7.14), lme4 (>= 1.1-18.9000), Matrix, nlme, numDeriv
LinkingTo: TMB, RcppEigen
Suggests: knitr, rmarkdown, testthat, MASS, lattice, ggplot2 (>= 2.2.1), mlmRev, bbmle (>=
          1.0.19), pscl, coda, reshape2, car (>= 3.0.6), emmeans (>= 1.4), estimability,
          DHARMa, multcomp, MuMIn, effects (>= 4.0-1), dotwhisker, broom, broom.mixed, plyr,
          png, boot, texreg, xtable, huxtable, mvabund
SystemRequirements: GNU make
VignetteBuilder: knitr, rmarkdown
URL: https://github.com/glmmTMB/glmmTMB
LazyData: TRUE
BugReports: https://github.com/glmmTMB/glmmTMB/issues
NeedsCompilation: yes
Encoding: UTF-8
RoxygenNote: 7.1.2
RemoteType: github
RemoteHost: api.github.com
RemoteRepo: glmmTMB
RemoteUsername: glmmTMB
RemoteRef: ci_tweaks
RemoteSha: fd8bb78acd8b198147285ce94b1f67043349f570
RemoteSubdir: glmmTMB
GithubRepo: glmmTMB
GithubUsername: glmmTMB
GithubRef: ci_tweaks
GithubSHA1: fd8bb78acd8b198147285ce94b1f67043349f570
GithubSubdir: glmmTMB
Packaged: 2022-06-18 19:33:52 UTC; maciejnasinski
Author: Mollie Brooks [aut, cre] (<https://orcid.org/0000-0001-6963-8326>), Ben Bolker [aut]
          (<https://orcid.org/0000-0002-2127-0443>), Kasper Kristensen [aut], Martin
          Maechler [aut] (<https://orcid.org/0000-0002-8685-9910>), Arni Magnusson [aut]
          (<https://orcid.org/0000-0003-2769-6741>), Maeve McGillycuddy [ctb], Hans Skaug
          [aut], Anders Nielsen [aut] (<https://orcid.org/0000-0001-9683-9262>), Casper Berg
          [aut] (<https://orcid.org/0000-0002-3812-5269>), Koen van Bentham [aut], Nafis
          Sadat [ctb] (<https://orcid.org/0000-0001-5715-616X>), Daniel Lüdecke [ctb]
          (<https://orcid.org/0000-0002-8895-3206>), Russ Lenth [ctb], Joseph O'Brien [ctb]
          (<https://orcid.org/0000-0001-9851-5077>), Charles J. Geyer [ctb], Mikael Jagan
          [ctb] (<https://orcid.org/0000-0002-3542-2938>), Brenton Wiernik [ctb]
          (<https://orcid.org/0000-0001-9560-6336>)
Maintainer: Mollie Brooks <[email protected]>
Built: R 4.2.0; aarch64-apple-darwin20; 2022-06-18 19:33:53 UTC; unix

-- File: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/glmmTMB/Meta/package.rds

Answer 2

Entries in Remotes that are intended to install from GitHub can take the following

[<package>=][github::]<username>/<repository>[/<subdir>][<detail>]

对于此示例，远程字段中的条目应为 glmmtmb = github :: glmmtmb/glmmtmb/glmmtmb/glmmtmb/glmmtmb/glmmtmb@ci_tweaks@ci_tweaks@ci_tweaks@ci_tweaks ， glmmtmb 应出现在依赖> 中（或在类似的字段中，例如建议）。