如何将其他跳过连接路径添加到U-NET?
嗨,我正在处理CT扫描图像分割任务。我已经从两个不同的CT窗口(WW和WL)中提取了JPEG图像。但是面具是相同的。
现在,我想使用第二组输入图像添加一个额外的路径(请参阅图像)。我认为这可能会给网络提供其他上下文。但是,我不确定如何实现。
这是我的U-NET模型。
import tensorflow as tf
IMG_WIDTH = 128
IMG_HEIGHT = 128
IMG_CHANNELS = 3
#Build the model
inputs = tf.keras.layers.Input((IMG_HEIGHT, IMG_WIDTH, IMG_CHANNELS))
s = tf.keras.layers.Lambda(lambda x: x / 255)(inputs)
#Contraction path
c1 = tf.keras.layers.Conv2D(16, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(s)
c1 = tf.keras.layers.Dropout(0.1)(c1)
c1 = tf.keras.layers.Conv2D(16, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c1)
p1 = tf.keras.layers.MaxPooling2D((2, 2))(c1)
c2 = tf.keras.layers.Conv2D(32, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(p1)
c2 = tf.keras.layers.Dropout(0.1)(c2)
c2 = tf.keras.layers.Conv2D(32, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c2)
p2 = tf.keras.layers.MaxPooling2D((2, 2))(c2)
c3 = tf.keras.layers.Conv2D(64, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(p2)
c3 = tf.keras.layers.Dropout(0.2)(c3)
c3 = tf.keras.layers.Conv2D(64, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c3)
p3 = tf.keras.layers.MaxPooling2D((2, 2))(c3)
c4 = tf.keras.layers.Conv2D(128, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(p3)
c4 = tf.keras.layers.Dropout(0.2)(c4)
c4 = tf.keras.layers.Conv2D(128, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c4)
p4 = tf.keras.layers.MaxPooling2D(pool_size=(2, 2))(c4)
c5 = tf.keras.layers.Conv2D(256, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(p4)
c5 = tf.keras.layers.Dropout(0.3)(c5)
c5 = tf.keras.layers.Conv2D(256, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c5)
#Expansive path
u6 = tf.keras.layers.Conv2DTranspose(128, (2, 2), strides=(2, 2), padding='same')(c5)
u6 = tf.keras.layers.concatenate([u6, c4])
c6 = tf.keras.layers.Conv2D(128, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(u6)
c6 = tf.keras.layers.Dropout(0.2)(c6)
c6 = tf.keras.layers.Conv2D(128, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c6)
u7 = tf.keras.layers.Conv2DTranspose(64, (2, 2), strides=(2, 2), padding='same')(c6)
u7 = tf.keras.layers.concatenate([u7, c3])
c7 = tf.keras.layers.Conv2D(64, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(u7)
c7 = tf.keras.layers.Dropout(0.2)(c7)
c7 = tf.keras.layers.Conv2D(64, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c7)
u8 = tf.keras.layers.Conv2DTranspose(32, (2, 2), strides=(2, 2), padding='same')(c7)
u8 = tf.keras.layers.concatenate([u8, c2])
c8 = tf.keras.layers.Conv2D(32, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(u8)
c8 = tf.keras.layers.Dropout(0.1)(c8)
c8 = tf.keras.layers.Conv2D(32, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c8)
u9 = tf.keras.layers.Conv2DTranspose(16, (2, 2), strides=(2, 2), padding='same')(c8)
u9 = tf.keras.layers.concatenate([u9, c1], axis=3)
c9 = tf.keras.layers.Conv2D(16, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(u9)
c9 = tf.keras.layers.Dropout(0.1)(c9)
c9 = tf.keras.layers.Conv2D(16, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c9)
outputs = tf.keras.layers.Conv2D(1, (1, 1), activation='sigmoid')(c9)
model = tf.keras.Model(inputs=[inputs], outputs=[outputs])
model.compile(optimizer='adam', loss='binary_crossentropy', metrics=['accuracy'])
model.summary()
Hi I'm working on a CT scan image segmentation task. I've extracted jpeg image from DICOM from two different CT window (WW and WL). But the masks are the same.
Now, I want to add an additional path to U-net with a second set of the input images (see image). I think it might give additional context to the network. But, I'm not sure how to implement this.
This is my U-net model.
import tensorflow as tf
IMG_WIDTH = 128
IMG_HEIGHT = 128
IMG_CHANNELS = 3
#Build the model
inputs = tf.keras.layers.Input((IMG_HEIGHT, IMG_WIDTH, IMG_CHANNELS))
s = tf.keras.layers.Lambda(lambda x: x / 255)(inputs)
#Contraction path
c1 = tf.keras.layers.Conv2D(16, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(s)
c1 = tf.keras.layers.Dropout(0.1)(c1)
c1 = tf.keras.layers.Conv2D(16, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c1)
p1 = tf.keras.layers.MaxPooling2D((2, 2))(c1)
c2 = tf.keras.layers.Conv2D(32, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(p1)
c2 = tf.keras.layers.Dropout(0.1)(c2)
c2 = tf.keras.layers.Conv2D(32, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c2)
p2 = tf.keras.layers.MaxPooling2D((2, 2))(c2)
c3 = tf.keras.layers.Conv2D(64, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(p2)
c3 = tf.keras.layers.Dropout(0.2)(c3)
c3 = tf.keras.layers.Conv2D(64, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c3)
p3 = tf.keras.layers.MaxPooling2D((2, 2))(c3)
c4 = tf.keras.layers.Conv2D(128, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(p3)
c4 = tf.keras.layers.Dropout(0.2)(c4)
c4 = tf.keras.layers.Conv2D(128, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c4)
p4 = tf.keras.layers.MaxPooling2D(pool_size=(2, 2))(c4)
c5 = tf.keras.layers.Conv2D(256, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(p4)
c5 = tf.keras.layers.Dropout(0.3)(c5)
c5 = tf.keras.layers.Conv2D(256, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c5)
#Expansive path
u6 = tf.keras.layers.Conv2DTranspose(128, (2, 2), strides=(2, 2), padding='same')(c5)
u6 = tf.keras.layers.concatenate([u6, c4])
c6 = tf.keras.layers.Conv2D(128, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(u6)
c6 = tf.keras.layers.Dropout(0.2)(c6)
c6 = tf.keras.layers.Conv2D(128, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c6)
u7 = tf.keras.layers.Conv2DTranspose(64, (2, 2), strides=(2, 2), padding='same')(c6)
u7 = tf.keras.layers.concatenate([u7, c3])
c7 = tf.keras.layers.Conv2D(64, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(u7)
c7 = tf.keras.layers.Dropout(0.2)(c7)
c7 = tf.keras.layers.Conv2D(64, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c7)
u8 = tf.keras.layers.Conv2DTranspose(32, (2, 2), strides=(2, 2), padding='same')(c7)
u8 = tf.keras.layers.concatenate([u8, c2])
c8 = tf.keras.layers.Conv2D(32, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(u8)
c8 = tf.keras.layers.Dropout(0.1)(c8)
c8 = tf.keras.layers.Conv2D(32, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c8)
u9 = tf.keras.layers.Conv2DTranspose(16, (2, 2), strides=(2, 2), padding='same')(c8)
u9 = tf.keras.layers.concatenate([u9, c1], axis=3)
c9 = tf.keras.layers.Conv2D(16, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(u9)
c9 = tf.keras.layers.Dropout(0.1)(c9)
c9 = tf.keras.layers.Conv2D(16, (3, 3), activation='relu', kernel_initializer='he_normal', padding='same')(c9)
outputs = tf.keras.layers.Conv2D(1, (1, 1), activation='sigmoid')(c9)
model = tf.keras.Model(inputs=[inputs], outputs=[outputs])
model.compile(optimizer='adam', loss='binary_crossentropy', metrics=['accuracy'])
model.summary()
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您可以使用LABDA层以这种方式将频道分开,
然后将其与新输入获取频道,然后在这样的最后一层将其串联,
因此您可以在
x0
上详细说明阻止您再次与x1
连接you could use a labda layer to split the channels like this
in this way you get the channel with the new input and then you concatenate it at the last layer like this
so you elaborate on
x0
and on the last block you concatenate again withx1