当我打开程序时，为什么r立即显示软件包错误？

Question

当我打开r时，在输入任何命令之前，控制台立即显示一个错误，表明未安装策划>策划的metagenogenomicdata 软件包。

R version 4.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics"
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Error in library("curatedMetagenomicData") : 
  there is no package called ‘curatedMetagenomicData’

策划质原核达塔塔是我几年前使用的生物处理程序软件包，我必须在某个时候删除它。当我尝试重新安装它时，安装失败，似乎是因为它尚未安装？

> BiocManager::install("curatedMetagenomicData")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.0 (2022-04-22 ucrt)
Installing package(s) 'curatedMetagenomicData'
installing the source package ‘curatedMetagenomicData’

trying URL 'https://bioconductor.org/packages/3.15/data/experiment/src/contrib/curatedMetagenomicData_3.4.2.tar.gz'
Content type 'application/x-gzip' length 1855762 bytes (1.8 MB)
downloaded 1.8 MB

Error in library("curatedMetagenomicData") : 
  there is no package called 'curatedMetagenomicData'
Execution halted

The downloaded source packages are in
    ‘C:\Users\jpennycook\AppData\Local\Temp\RtmpqcBkUu\downloaded_packages’
Warning message:
In install.packages(...) :
  installation of package ‘curatedMetagenomicData’ had non-zero exit status

这似乎在意外的地方引起了问题，例如当我尝试编织R Markdown文档时（完全与>> 策划的metagenogenomicdata ），这会在Rstudio的“渲染”窗口中失败。

Error in library("curatedMetagenomicData") : 
  there is no package called 'curatedMetagenomicData'
Execution halted

我尝试尽可能彻底地删除R和Rstudio安装，然后重新安装，但问题仍然存在。我不明白什么提示R可以检查此软件包是否已安装。谁能帮我理解这一点？我目前不需要使用有关包裹，但是错误正在变得痛苦。

编辑：

当我尝试从源中安装任何软件包时（无论是 还是另一个），例如 dbplyr ）。在每种情况下，显然尚未安装策划的Metagenogenomicdata。

> install.packages("C:/Users/jpennycook/AppData/Local/Temp/RtmpqcBkUu/downloaded_packages/curatedMetagenomicData_3.4.2.tar.gz",
+                  repos = NULL, type = "source")
Installing package into ‘C:/Users/jpennycook/Documents/myRlibs’
(as ‘lib’ is unspecified)
Error in library("curatedMetagenomicData") : 
  there is no package called 'curatedMetagenomicData'
Execution halted
Warning in install.packages :
  installation of package ‘C:/Users/jpennycook/AppData/Local/Temp/RtmpqcBkUu/downloaded_packages/curatedMetagenomicData_3.4.2.tar.gz’ had non-zero exit status

> install.packages("C:/Users/jpennycook/AppData/Local/Temp/RtmpqcBkUu/downloaded_packages/dbplyr_2.2.0.tar.gz",
+                  repos = NULL, type = "source")
Installing package into ‘C:/Users/jpennycook/Documents/myRlibs’
(as ‘lib’ is unspecified)
Error in library("curatedMetagenomicData") : 
  there is no package called 'curatedMetagenomicData'
Execution halted
Warning in install.packages :
  installation of package ‘C:/Users/jpennycook/AppData/Local/Temp/RtmpqcBkUu/downloaded_packages/dbplyr_2.2.0.tar.gz’ had non-zero exit status

Answer 1

根据评论中的回答，我将向答案提升我的评论。

此问题的两个可能原因是，

• 您在主目录中有一个 .rprofile 文件，试图加载
• .rdata 文件，自动加载；它中有一个对象，它将触发此软件包的加载

注意，在任何一种情况下，其名称以。开头的文件通常是默认情况下的。仔细搜索它们

file.exists（“。rdata”）和 file.exists（“〜/.rprofile”）会告诉您这些文件是否存在；您可以通过临时移动/重命名每个问题来诊断问题。