R.2.0的Macos Macos M1（ARM64）上的OpenSSL安装故障（“剧烈的儿童疗法”）

Question

我最近将我的R版本升级到最新版本（4.2.0，20222--2022-- 04-22）。安装 openssl package时，我将收到此错误消息。我尝试从Cran和Github安装。

这是错误消息：

Error: package or namespace load failed for ‘openssl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-openssl/00new/openssl/libs/openssl.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-openssl/00new/openssl/libs/openssl.so, 0x0006): symbol not found in flat namespace '_ASN1_STRING_to_UTF8'
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/openssl’
Warning message:
In i.p(...) :
  installation of package ‘/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T//RtmpjQXYpT/file13117452ee57a/openssl_2.0.1.tar.gz’ had non-zero exit status

这是会话中的整个日志：

R version 4.2.0 (2022-04-22) -- "Vigorous Calisthenics"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> devtools::install_github("jeroen/openssl")
Downloading GitHub repo jeroen/openssl@HEAD
✔  checking for file ‘/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpjQXYpT/remotes1311770b98515/jeroen-openssl-47bf18b/DESCRIPTION’ ...
─  preparing ‘openssl’:
✔  checking DESCRIPTION meta-information ...
─  cleaning src
─  running ‘cleanup’
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘openssl_2.0.1.tar.gz’
   
* installing *source* package ‘openssl’ ...
** using staged installation
Using PKG_CFLAGS=-I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include
Using PKG_LIBS=-L/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/lib -lssl -lcrypto
** libs
rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c aes.c -o aes.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c base64.c -o base64.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c bignum.c -o bignum.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c cert.c -o cert.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c compatibility.c -o compatibility.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c diffie.c -o diffie.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c envelope.c -o envelope.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c error.c -o error.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c hash.c -o hash.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c info.c -o info.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c keygen.c -o keygen.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c keys.c -o keys.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c onload.c -o onload.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c openssh.c -o openssh.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c password.c -o password.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c pbkdf.c -o pbkdf.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c pem.c -o pem.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c pkcs12.c -o pkcs12.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c pkcs7.c -o pkcs7.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c rand.c -o rand.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c rsa.c -o rsa.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c signing.c -o signing.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c ssl.c -o ssl.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c stream.c -o stream.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c write.c -o write.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c x25519.c -o x25519.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/include  -I/usr/local/opt/[email protected]/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c bcrypt/blowfish.c -o bcrypt/blowfish.o
ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/opt/[email protected]/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -L/private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/lib -lssl -lcrypto -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/usr/local/opt/[email protected]/lib'
ld: warning: ignoring file /private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/lib/libcrypto.a, building for macOS-arm64 but attempting to link with file built for macOS-x86_64
ld: warning: ignoring file /private/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T/RtmpOrSTix/R.INSTALL131a33d271a4b/openssl/.deps/lib/libssl.a, building for macOS-arm64 but attempting to link with file built for macOS-x86_64
installing to /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-openssl/00new/openssl/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘openssl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-openssl/00new/openssl/libs/openssl.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-openssl/00new/openssl/libs/openssl.so, 0x0006): symbol not found in flat namespace '_ASN1_STRING_to_UTF8'
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/openssl’
Warning message:
In i.p(...) :
  installation of package ‘/var/folders/5d/z3_6_g1d6d91v4ppjkh4ldnh0000gn/T//RtmpjQXYpT/file13117452ee57a/openssl_2.0.1.tar.gz’ had non-zero exit status

当前会话信息：

> sessionInfo()
R version 4.2.0 (2022-04-22)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.3.1

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] rstudioapi_0.13   magrittr_2.0.3    usethis_2.1.5     devtools_2.4.3    pkgload_1.2.4     R6_2.5.1         
 [7] rlang_1.0.2       fastmap_1.1.0     tools_4.2.0       pkgbuild_1.3.1    sessioninfo_1.2.2 cli_3.3.0        
[13] withr_2.5.0       ellipsis_0.3.2    remotes_2.4.2     rprojroot_2.0.3   lifecycle_1.0.1   crayon_1.5.1     
[19] brio_1.1.3        processx_3.5.3    purrr_0.3.4       callr_3.7.0       fs_1.5.2          ps_1.7.0         
[25] curl_4.3.2        testthat_3.1.4    memoise_2.0.1     glue_1.6.2        cachem_1.0.6      compiler_4.2.0   
[31] desc_1.4.1        prettyunits_1.1.1

我有 [email＆nbsp; procept] 用自制的机器安装在我的机器上，我的〜/.zshrc文件中具有以下配置：

### openssl:
path+=("/opt/homebrew/opt/[email protected]/bin")
#path+=("/opt/homebrew/opt/openssl@3/bin")
export LDFLAGS="-L/opt/homebrew/opt/[email protected]/lib"
export CPPFLAGS="-I/opt/homebrew/opt/[email protected]/include"
#export LDFLAGS="-L/opt/homebrew/opt/openssl@3/lib"
export PKG_CONFIG_PATH="/opt/homebrew/opt/[email protected]/lib/pkgconfig"
export LD_LIBRARY_PATH="/opt/homebrew/opt/[email protected]/lib"
# export PKG_CONFIG_PATH="/opt/homebrew/opt/openssl@3/lib/pkgconfig"
export RUBY_CONFIGURE_OPTS="--with-openssl-dir=/opt/homebrew/opt/[email protected]"

有什么想法吗？当我尝试使用googlesheets4软件包时，我注意到大约一周后的问题。