run_viper的范围错误,r run_viper在r中使用dorothea grogulon
尝试使用Dorothea和Viper进行上游TF分析时,我有一个错误消息。任何建议都会有所帮助,谢谢。
data(dorothea_mm, package = "dorothea")
regulons <- dorothea_mm %>%
dplyr::filter(confidence %in% c("A", "B", "C"))
tf_activities_stat <- run_viper(resLFC_tb, regulons,
options = list(minsize = 4,
eset.filter = FALSE, cores = 1, verbose = FALSE, nes = TRUE))
Error message: Error in regulon[[i]] : subscript out of bounds
I've got an error message when trying to do a upstream TF analysis using DoRothEA and Viper. Any suggestion would be helpful, thanks.
data(dorothea_mm, package = "dorothea")
regulons <- dorothea_mm %>%
dplyr::filter(confidence %in% c("A", "B", "C"))
tf_activities_stat <- run_viper(resLFC_tb, regulons,
options = list(minsize = 4,
eset.filter = FALSE, cores = 1, verbose = FALSE, nes = TRUE))
Error message: Error in regulon[[i]] : subscript out of bounds
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