shquote（）breaks system（）命令而不是逃脱空间
我正在运行R脚本中的GCMS软件AMDI，以分析GCMS数据。基本语法是：
system("AMDIS_PATH GCMS_FILE_PATH /S /GC /GE /E"
使用“ /s /gc /ge /e”，指AMDIS程序中的功能。
我想制作代码为“万无一失”，因此我允许使用“/”而不是“ \\”的路径。而且我还允许路径中的空间，用shquote（...，type =“ cmd”）逃脱它们，
这意味着完整的代码看起来
system(paste(shQuote(gsub("/", "\\", AMDIS_PATH, fixed = T), type = 'cmd'), shQuote(gsub("/", "\\", GCMS_FILE_PATH, fixed = T), type = 'cmd'), "/S /GD /GS /E"))
此代码不起作用（output = 65535） ，但是有一个问题：
如果我从gcms_file_path中删除shquotes。然后，一切都应该像它一样工作（只要File_path不包含任何空间）。 因此，执行这样的代码确实有效：
system(paste(shQuote(gsub("/", "\\", AMDIS_PATH, fixed = T), type = 'cmd'), gsub("/", "\\", GCMS_FILE_PATH, fixed = T), "/S /GD /GS /E"))
任何想法Shquote为AMDIS_PATH的工作正常，而对于GCMS_FILE_PATH不适合？以及如何运行代码并仍然在GCMS_FILE_PATH中逃脱空格？
I'm running the GCMS software AMDIS inside an R script to analyze GCMS data. The basic syntax is:
system("AMDIS_PATH GCMS_FILE_PATH /S /GC /GE /E"
With "/S /GC /GE /E" referring to functionalities within the AMDIS program.
I want to make the code 'fool-proof', so I'm allowing paths with "/" instead of "\\". And I'm also allowing spaces in the paths, escaping them with shQuote(..., type = "cmd")
Which means the full code looks like
system(paste(shQuote(gsub("/", "\\", AMDIS_PATH, fixed = T), type = 'cmd'), shQuote(gsub("/", "\\", GCMS_FILE_PATH, fixed = T), type = 'cmd'), "/S /GD /GS /E"))
This code does not work (output = 65535), but there's a catch:
If I remove the shQuotes from my GCMS_FILE_PATH. Then everything works like it should (so long as the FILE_PATH does not contain any spaces).
So executing the code like this does work:
system(paste(shQuote(gsub("/", "\\", AMDIS_PATH, fixed = T), type = 'cmd'), gsub("/", "\\", GCMS_FILE_PATH, fixed = T), "/S /GD /GS /E"))
Any idea why shQuote works fine for the AMDIS_PATH, but not for the GCMS_FILE_PATH? And how I can run my code and still escape spaces in the GCMS_FILE_PATH?
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没有一个可重复的示例很难说发生了什么在这里，请注意，
？系统说：因此，使用
type ='cmd'可能完全不合适，请考虑使用system2而不是。您的问题可能与您期望的
System要做的事情或期望shquote要做的事情。您可以通过System用CAT来轻松地解开两者，以调试。Without a reproducible example it's hard to say what is going on here, but note that
?systemsays:So escaping with
type = 'cmd'might not be appropriate at all, consider usingsystem2instead.Your issue might either be with what you expect
systemto do or what you expectshQuoteto do. You can easily disentangle the the two by replacingsystemwithcatfor debugging.