中断或没有功能区 ggplot geomribbon 或 stat_summary
我有一个看起来像这样的 df:
ID Genotype Time10min N mean sd se ci
43 1 k_DMSO 43 10 0.029318750 0.009793853 0.0030970883 0.007006100
44 1 k_DMSO 44 10 0.008825716 0.005164837 0.0016332648 0.003694702
45 1 k_DMSO 45 10 0.008466507 0.002879642 0.0009106228 0.002059972
46 1 k_DMSO 46 10 0.005871386 0.003848483 0.0012169970 0.002753039
47 1 k_DMSO 47 10 0.003126562 0.004755841 0.0015039288 0.003402123
48 1 k_DMSO 48 10 0.005546801 0.003725496 0.0011781053 0.002665059
我想绘制一个图表,其中 y 轴为“mean”,x 轴为“Time10min”。
为此,我想要使用此函数计算“基因型”指定的组内所有平均值的平均值:
ggplot((data_all), aes(x=Time10min, y=mean))+
stat_summary(aes(group=Genotype, color=Genotype), fun=mean, geom="line", size=2)
我得到每组一行的平均值,这就是我想要的。
然后我想添加一个基于 sem 的 geom_ribbon 。
我尝试了以下两个选项:
ggplot((data_all), aes(x=Time10min, y=mean))+
stat_summary(aes(group=Genotype, color=Genotype), fun=mean, geom="line", size=2)+
geom_ribbon(aes(group=Genotype, fill=Genotype,ymin=mean-se, ymax=mean+se), alpha=0.5)
在更新我的 R 之前有效的其他选项是这个:
ggplot((data_all), aes(x=Time10min, y=mean))+
stat_summary(aes(group=Genotype, color=Genotype), fun=mean, geom="line", size=2)+
stat_summary(aes(group=Genotype, fill=Genotype),geom="ribbon",fun.data = mean_cl_boot, alpha= 0.5)
现在我不断收到这样的错误:
Warning: Computation failed in `stat_summary()`:
数据类型是:
'data.frame': 36100 obs. of 8 variables:
$ ID : int 1 1 1 1 1 1 1 1 1 1 ...
$ Genotype : Factor w/ 10 levels "w_DMSO","h_DMSO",..: 3 3 3 3 3 3 3 3 3 3 ...
$ Time10min: int 1 2 3 4 5 6 7 8 9 10 ...
$ N : num 10 10 10 10 10 10 10 10 10 10 ...
$ mean : num 0.026 0.0341 0.0312 0.0173 0.0114 ...
$ sd : num 0.00801 0.0047 0.01085 0.01521 0.00868 ...
$ se : num 0.00253 0.00149 0.00343 0.00481 0.00274 ...
$ ci : num 0.00573 0.00336 0.00776 0.01088 0.00621 ...
请问,有人可以帮我在这个图上画一条漂亮的丝带吗?
谢谢你!
I have a df that looks like this:
ID Genotype Time10min N mean sd se ci
43 1 k_DMSO 43 10 0.029318750 0.009793853 0.0030970883 0.007006100
44 1 k_DMSO 44 10 0.008825716 0.005164837 0.0016332648 0.003694702
45 1 k_DMSO 45 10 0.008466507 0.002879642 0.0009106228 0.002059972
46 1 k_DMSO 46 10 0.005871386 0.003848483 0.0012169970 0.002753039
47 1 k_DMSO 47 10 0.003126562 0.004755841 0.0015039288 0.003402123
48 1 k_DMSO 48 10 0.005546801 0.003725496 0.0011781053 0.002665059
I want to plot a graph with "mean" on the y-axis and "Time10min" on the x-axis.
For this I want the mean across all means within a group specified by "Genotype" using this function:
ggplot((data_all), aes(x=Time10min, y=mean))+
stat_summary(aes(group=Genotype, color=Genotype), fun=mean, geom="line", size=2)
I get one line per group as mean which is what I want.
I then want to add a geom_ribbon based on sem.
I tried the following 2 options:
ggplot((data_all), aes(x=Time10min, y=mean))+
stat_summary(aes(group=Genotype, color=Genotype), fun=mean, geom="line", size=2)+
geom_ribbon(aes(group=Genotype, fill=Genotype,ymin=mean-se, ymax=mean+se), alpha=0.5)
This gives me a very disrupted ribbon looking something like this:
The other options that worked before updating my R is this one:
ggplot((data_all), aes(x=Time10min, y=mean))+
stat_summary(aes(group=Genotype, color=Genotype), fun=mean, geom="line", size=2)+
stat_summary(aes(group=Genotype, fill=Genotype),geom="ribbon",fun.data = mean_cl_boot, alpha= 0.5)
Now I keep getting an error like this:
Warning: Computation failed in `stat_summary()`:
The data types are:
'data.frame': 36100 obs. of 8 variables:
$ ID : int 1 1 1 1 1 1 1 1 1 1 ...
$ Genotype : Factor w/ 10 levels "w_DMSO","h_DMSO",..: 3 3 3 3 3 3 3 3 3 3 ...
$ Time10min: int 1 2 3 4 5 6 7 8 9 10 ...
$ N : num 10 10 10 10 10 10 10 10 10 10 ...
$ mean : num 0.026 0.0341 0.0312 0.0173 0.0114 ...
$ sd : num 0.00801 0.0047 0.01085 0.01521 0.00868 ...
$ se : num 0.00253 0.00149 0.00343 0.00481 0.00274 ...
$ ci : num 0.00573 0.00336 0.00776 0.01088 0.00621 ...
Please, can someone help me to get a nice ribbon onto this plot?
Thank you!
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