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我没有看到“我手动对齐网格”和“生成的网格没有平坦且光滑的表面”之间的关系。对齐的网格应该与输入网格类似。
尽管如此,请尝试将 Meshlab 过滤器 Taubin Smooth 应用于您的网格在不引入大变形的情况下重新排列拓扑。
I don't see the relation between "I manually aligned a mesh" and "resulting mesh does not have a flat and smooth surface". The aligned mesh should be similar to input mesh.
Despite that, try to apply the Meshlab filter Taubin Smooth to your mesh to rearrange the topology without introducing big deformations.