基因绘图仪安装错误
我在基因绘图仪（Bioconductor 包）安装过程中进行了操作。我在 Linux Mint 9 上使用 R 2.14。我认为命名空间是造成这种情况的原因，但我不知道如何修复它......
这是错误：
> source("http://bioconductor.org/biocLite.R")
> biocLite("geneplotter")
BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.2.0.
Installing package(s) 'geneplotter'
Installing package(s) into ‘/home/nicolas/R/x86_64-pc-linux-gnu-library/2.14’
(as ‘lib’ is unspecified)
essai de l'URL 'http://www.bioconductor.org/packages/2.9/bioc/src/contrib/geneplotter_1.31.4.tar.gz'
Content type 'application/x-gzip' length 1387616 bytes (1.3 Mb)
URL ouverte
==================================================
downloaded 1.3 Mb
* installing *source* package ‘geneplotter’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘byChroms.Rnw’
‘visualize.Rnw’
** testing if installed package can be loaded
Error in namespaceExport(ns, exports) :
undefined exports: .__C__file, .__C__connection
Erreur : le chargement a échoué
Exécution arrêtée
ERREUR : le chargement a échoué
* removing ‘/home/nicolas/R/x86_64-pc-linux-gnu-library/2.14/geneplotter’
The downloaded packages are in
‘/tmp/RtmpO1aY1T/downloaded_packages’
Message d'avis :
In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package ‘geneplotter’ had non-zero exit status
提前感谢，
N。
I've during the geneplotter (Bioconductor package) installation. I'm using R 2.14 on Linux Mint 9. I think the namespace is responsible for this but I don't know how to fix it ...
Here's the error :
> source("http://bioconductor.org/biocLite.R")
> biocLite("geneplotter")
BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.2.0.
Installing package(s) 'geneplotter'
Installing package(s) into ‘/home/nicolas/R/x86_64-pc-linux-gnu-library/2.14’
(as ‘lib’ is unspecified)
essai de l'URL 'http://www.bioconductor.org/packages/2.9/bioc/src/contrib/geneplotter_1.31.4.tar.gz'
Content type 'application/x-gzip' length 1387616 bytes (1.3 Mb)
URL ouverte
==================================================
downloaded 1.3 Mb
* installing *source* package ‘geneplotter’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘byChroms.Rnw’
‘visualize.Rnw’
** testing if installed package can be loaded
Error in namespaceExport(ns, exports) :
undefined exports: .__C__file, .__C__connection
Erreur : le chargement a échoué
Exécution arrêtée
ERREUR : le chargement a échoué
* removing ‘/home/nicolas/R/x86_64-pc-linux-gnu-library/2.14/geneplotter’
The downloaded packages are in
‘/tmp/RtmpO1aY1T/downloaded_packages’
Message d'avis :
In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package ‘geneplotter’ had non-zero exit status
Thanks in advance,
N.
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更仔细地研究一下，
geneplotter无法构建初始版本。因此，您选择的版本是倒数第二个版本。您发现的问题已于昨天得到纠正，及时进入下一个构建周期。geneplotter在正确构建后应该会正确安装，可能是在太平洋夏令时间中午；查找版本 1.32.1。回想起来，这不是一个SO问题； Bioconductor邮件列表有一个发帖工具，不需要订阅。Looking into this more closely,
geneplotterfailed to build for the initial release. So the version you are picking up is the penultimate version. The issue you identify was corrected yesterday, in time for the next build cycle.geneplottershould install correctly when it builds correctly, probably at noon PDT; look for version 1.32.1. In retrospect not a SO question; the Bioconductor mailing list has a post facility that does not require subscription.