多序列比对
我知道这可能看起来有点奇怪,但我想知道是否有人见过 多序列比对问题。如果没有(正如我想的那样),一些易于移植代码(即我不需要厨房水槽)也可以。请记住,我不会对齐超过 4-5 个长度小于 100-200 个符号的序列。
注意:我知道 javascript 并不是这类事情的最佳选择。相信我,我必须用 javascript 来做这件事是有充分理由的。
I know it may seem kind of strange but I was wondering if anybody has ever seen some javascript code for the multiple sequence alignment problem. If not (as I suppose) also some easily portable code (i.e. I need no kitchen sink) will do. Keep in mind that I won't be aligning more than 4-5 sequences less than 100-200 symbols long.
Note: I know javascript is not really the best choice for this kind of things. Trust me, there's a good reason why I have to do it in javascript.
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我发现的最接近的只是成对序列比对算法。我把它变成了可以执行 MSA 的东西,但它绝对太慢,无法用于超过一百个符号的任何东西。
The closest thing I found is just a pairwise sequence alignment algorithm. I turned it into something that would do MSA but it's definitely too slow to be usable for anything longer than a hundred symbols.