01. Python 工具
02. Python 基础
03. Numpy
- Numpy 简介
- Matplotlib 基础
- Numpy 数组及其索引
- 数组类型
- 数组方法
- 数组排序
- 数组形状
- 对角线
- 数组与字符串的转换
- 数组属性方法总结
- 生成数组的函数
- 矩阵
- 一般函数
- 向量化函数
- 二元运算
- ufunc 对象
- choose 函数实现条件筛选
- 数组广播机制
- 数组读写
- 结构化数组
- 记录数组
- 内存映射
- 从 Matlab 到 Numpy
04. Scipy
05. Python 进阶
- sys 模块简介
- 与操作系统进行交互:os 模块
- CSV 文件和 csv 模块
- 正则表达式和 re 模块
- datetime 模块
- SQL 数据库
- 对象关系映射
- 函数进阶:参数传递,高阶函数,lambda 匿名函数,global 变量,递归
- 迭代器
- 生成器
- with 语句和上下文管理器
- 修饰符
- 修饰符的使用
- operator, functools, itertools, toolz, fn, funcy 模块
- 作用域
- 动态编译
06. Matplotlib
- Pyplot 教程
- 使用 style 来配置 pyplot 风格
- 处理文本(基础)
- 处理文本(数学表达式)
- 图像基础
- 注释
- 标签
- figures, subplots, axes 和 ticks 对象
- 不要迷信默认设置
- 各种绘图实例
07. 使用其他语言进行扩展
- 简介
- Python 扩展模块
- Cython:Cython 基础,将源代码转换成扩展模块
- Cython:Cython 语法,调用其他C库
- Cython:class 和 cdef class,使用 C++
- Cython:Typed memoryviews
- 生成编译注释
- ctypes
08. 面向对象编程
09. Theano 基础
- Theano 简介及其安装
- Theano 基础
- Theano 在 Windows 上的配置
- Theano 符号图结构
- Theano 配置和编译模式
- Theano 条件语句
- Theano 循环:scan(详解)
- Theano 实例:线性回归
- Theano 实例:Logistic 回归
- Theano 实例:Softmax 回归
- Theano 实例:人工神经网络
- Theano 随机数流变量
- Theano 实例:更复杂的网络
- Theano 实例:卷积神经网络
- Theano tensor 模块:基础
- Theano tensor 模块:索引
- Theano tensor 模块:操作符和逐元素操作
- Theano tensor 模块:nnet 子模块
- Theano tensor 模块:conv 子模块
10. 有趣的第三方模块
11. 有用的工具
- pprint 模块:打印 Python 对象
- pickle, cPickle 模块:序列化 Python 对象
- json 模块:处理 JSON 数据
- glob 模块:文件模式匹配
- shutil 模块:高级文件操作
- gzip, zipfile, tarfile 模块:处理压缩文件
- logging 模块:记录日志
- string 模块:字符串处理
- collections 模块:更多数据结构
- requests 模块:HTTP for Human
12. Pandas
最小化函数
minimize 函数
In [1]:
%pylab inline
set_printoptions(precision=3, suppress=True)
Populating the interactive namespace from numpy and matplotlib
已知斜抛运动的水平飞行距离公式:
$d = 2 \frac{v_0^2}{g} \sin(\theta) \cos (\theta)$
- $d$ 水平飞行距离
- $v_0$ 初速度大小
- $g$ 重力加速度
- $\theta$ 抛出角度
希望找到使 $d$ 最大的角度 $\theta$。
定义距离函数:
In [2]:
def dist(theta, v0):
"""calculate the distance travelled by a projectile launched
at theta degrees with v0 (m/s) initial velocity.
"""
g = 9.8
theta_rad = pi * theta / 180
return 2 * v0 ** 2 / g * sin(theta_rad) * cos(theta_rad)
theta = linspace(0,90,90)
p = plot(theta, dist(theta, 1.))
xl = xlabel(r'launch angle $\theta (^{\circ})$')
yl = ylabel('horizontal distance traveled')
https://www.wenjiangs.com/wp-content/uploads/2022/docimg20/bdKjTyPDsDWkFBYn-VKfwXC.png alt="">
因为 Scipy
提供的是最小化方法,所以最大化距离就相当于最小化距离的负数:
In [3]:
def neg_dist(theta, v0):
return -1 * dist(theta, v0)
导入 scipy.optimize.minimize
:
In [4]:
from scipy.optimize import minimize
result = minimize(neg_dist, 40, args=(1,))
print "optimal angle = {:.1f} degrees".format(result.x[0])
optimal angle = 45.0 degrees
minimize
接受三个参数:第一个是要优化的函数,第二个是初始猜测值,第三个则是优化函数的附加参数,默认 minimize
将优化函数的第一个参数作为优化变量,所以第三个参数输入的附加参数从优化函数的第二个参数开始。
查看返回结果:
In [5]:
print result
status: 0
success: True
njev: 18
nfev: 54
hess_inv: array([[ 8110.515]])
fun: -0.10204079220645729
x: array([ 45.02])
message: 'Optimization terminated successfully.'
jac: array([ 0.])
Rosenbrock 函数
Rosenbrock 函数是一个用来测试优化函数效果的一个非凸函数:
$f(x)=\sum\limits{i=1}^{N-1}{100\left(x{i+1}^2 - xi\right) ^2 + \left(1-x{i}\right)^2 }$
导入该函数:
In [6]:
from scipy.optimize import rosen
from mpl_toolkits.mplot3d import Axes3D
使用 N = 2
的 Rosenbrock 函数:
In [7]:
x, y = meshgrid(np.linspace(-2,2,25), np.linspace(-0.5,3.5,25))
z = rosen([x,y])
图像和最低点 (1,1)
:
In [8]:
fig = figure(figsize=(12,5.5))
ax = fig.gca(projection="3d")
ax.azim = 70; ax.elev = 48
ax.set_xlabel("X"); ax.set_ylabel("Y")
ax.set_zlim((0,1000))
p = ax.plot_surface(x,y,z,rstride=1, cstride=1, cmap=cm.jet)
rosen_min = ax.plot([1],[1],[0],"ro")
https://www.wenjiangs.com/wp-content/uploads/2022/docimg20/WmreWIhirOBkFLHa-WgaYuu.png alt="">
传入初始值:
In [9]:
x0 = [1.3, 1.6, -0.5, -1.8, 0.8]
result = minimize(rosen, x0)
print result.x
[ 1\. 1\. 1\. 1\. 1.]
随机给定初始值:
In [10]:
x0 = np.random.randn(10)
result = minimize(rosen, x0)
print x0
print result.x
[ 0.815 -2.086 0.297 1.079 -0.528 0.461 -0.13 -0.715 0.734 0.621]
[-0.993 0.997 0.998 0.999 0.999 0.999 0.998 0.997 0.994 0.988]
对于 N > 3
,函数的最小值为 $(x_1,x_2, ..., x_N) = (1,1,...,1)$,不过有一个局部极小值点 $(x_1,x_2, ..., x_N) = (-1,1,...,1)$,所以随机初始值如果选的不好的话,有可能返回的结果是局部极小值点:
优化方法
BFGS 算法
minimize
函数默认根据问题是否有界或者有约束,使用 'BFGS', 'L-BFGS-B', 'SLSQP'
中的一种。
可以查看帮助来得到更多的信息:
In [11]:
info(minimize)
minimize(fun, x0, args=(), method=None, jac=None, hess=None, hessp=None,
bounds=None, constraints=(), tol=None, callback=None, options=None)
Minimization of scalar function of one or more variables.
Parameters
----------
fun : callable
Objective function.
x0 : ndarray
Initial guess.
args : tuple, optional
Extra arguments passed to the objective function and its
derivatives (Jacobian, Hessian).
method : str or callable, optional
Type of solver. Should be one of
- 'Nelder-Mead'
- 'Powell'
- 'CG'
- 'BFGS'
- 'Newton-CG'
- 'Anneal (deprecated as of scipy version 0.14.0)'
- 'L-BFGS-B'
- 'TNC'
- 'COBYLA'
- 'SLSQP'
- 'dogleg'
- 'trust-ncg'
- custom - a callable object (added in version 0.14.0)
If not given, chosen to be one of ``BFGS``, ``L-BFGS-B``, ``SLSQP``,
depending if the problem has constraints or bounds.
jac : bool or callable, optional
Jacobian (gradient) of objective function. Only for CG, BFGS,
Newton-CG, L-BFGS-B, TNC, SLSQP, dogleg, trust-ncg.
If `jac` is a Boolean and is True, `fun` is assumed to return the
gradient along with the objective function. If False, the
gradient will be estimated numerically.
`jac` can also be a callable returning the gradient of the
objective. In this case, it must accept the same arguments as `fun`.
hess, hessp : callable, optional
Hessian (matrix of second-order derivatives) of objective function or
Hessian of objective function times an arbitrary vector p. Only for
Newton-CG, dogleg, trust-ncg.
Only one of `hessp` or `hess` needs to be given. If `hess` is
provided, then `hessp` will be ignored. If neither `hess` nor
`hessp` is provided, then the Hessian product will be approximated
using finite differences on `jac`. `hessp` must compute the Hessian
times an arbitrary vector.
bounds : sequence, optional
Bounds for variables (only for L-BFGS-B, TNC and SLSQP).
``(min, max)`` pairs for each element in ``x``, defining
the bounds on that parameter. Use None for one of ``min`` or
``max`` when there is no bound in that direction.
constraints : dict or sequence of dict, optional
Constraints definition (only for COBYLA and SLSQP).
Each constraint is defined in a dictionary with fields:
type : str
Constraint type: 'eq' for equality, 'ineq' for inequality.
fun : callable
The function defining the constraint.
jac : callable, optional
The Jacobian of `fun` (only for SLSQP).
args : sequence, optional
Extra arguments to be passed to the function and Jacobian.
Equality constraint means that the constraint function result is to
be zero whereas inequality means that it is to be non-negative.
Note that COBYLA only supports inequality constraints.
tol : float, optional
Tolerance for termination. For detailed control, use solver-specific
options.
options : dict, optional
A dictionary of solver options. All methods accept the following
generic options:
maxiter : int
Maximum number of iterations to perform.
disp : bool
Set to True to print convergence messages.
For method-specific options, see :func:`show_options()`.
callback : callable, optional
Called after each iteration, as ``callback(xk)``, where ``xk`` is the
current parameter vector.
Returns
-------
res : OptimizeResult
The optimization result represented as a ``OptimizeResult`` object.
Important attributes are: ``x`` the solution array, ``success`` a
Boolean flag indicating if the optimizer exited successfully and
``message`` which describes the cause of the termination. See
`OptimizeResult` for a description of other attributes.
See also
--------
minimize_scalar : Interface to minimization algorithms for scalar
univariate functions
show_options : Additional options accepted by the solvers
Notes
-----
This section describes the available solvers that can be selected by the
'method' parameter. The default method is *BFGS*.
**Unconstrained minimization**
Method *Nelder-Mead* uses the Simplex algorithm [1]_, [2]_. This
algorithm has been successful in many applications but other algorithms
using the first and/or second derivatives information might be preferred
for their better performances and robustness in general.
Method *Powell* is a modification of Powell's method [3]_, [4]_ which
is a conjugate direction method. It performs sequential one-dimensional
minimizations along each vector of the directions set (`direc` field in
`options` and `info`), which is updated at each iteration of the main
minimization loop. The function need not be differentiable, and no
derivatives are taken.
Method *CG* uses a nonlinear conjugate gradient algorithm by Polak and
Ribiere, a variant of the Fletcher-Reeves method described in [5]_ pp.
120-122\. Only the first derivatives are used.
Method *BFGS* uses the quasi-Newton method of Broyden, Fletcher,
Goldfarb, and Shanno (BFGS) [5]_ pp. 136\. It uses the first derivatives
only. BFGS has proven good performance even for non-smooth
optimizations. This method also returns an approximation of the Hessian
inverse, stored as `hess_inv` in the OptimizeResult object.
Method *Newton-CG* uses a Newton-CG algorithm [5]_ pp. 168 (also known
as the truncated Newton method). It uses a CG method to the compute the
search direction. See also *TNC* method for a box-constrained
minimization with a similar algorithm.
Method *Anneal* uses simulated annealing, which is a probabilistic
metaheuristic algorithm for global optimization. It uses no derivative
information from the function being optimized.
Method *dogleg* uses the dog-leg trust-region algorithm [5]_
for unconstrained minimization. This algorithm requires the gradient
and Hessian; furthermore the Hessian is required to be positive definite.
Method *trust-ncg* uses the Newton conjugate gradient trust-region
algorithm [5]_ for unconstrained minimization. This algorithm requires
the gradient and either the Hessian or a function that computes the
product of the Hessian with a given vector.
**Constrained minimization**
Method *L-BFGS-B* uses the L-BFGS-B algorithm [6]_, [7]_ for bound
constrained minimization.
Method *TNC* uses a truncated Newton algorithm [5]_, [8]_ to minimize a
function with variables subject to bounds. This algorithm uses
gradient information; it is also called Newton Conjugate-Gradient. It
differs from the *Newton-CG* method described above as it wraps a C
implementation and allows each variable to be given upper and lower
bounds.
Method *COBYLA* uses the Constrained Optimization BY Linear
Approximation (COBYLA) method [9]_, [10]_, [11]_. The algorithm is
based on linear approximations to the objective function and each
constraint. The method wraps a FORTRAN implementation of the algorithm.
Method *SLSQP* uses Sequential Least SQuares Programming to minimize a
function of several variables with any combination of bounds, equality
and inequality constraints. The method wraps the SLSQP Optimization
subroutine originally implemented by Dieter Kraft [12]_. Note that the
wrapper handles infinite values in bounds by converting them into large
floating values.
**Custom minimizers**
It may be useful to pass a custom minimization method, for example
when using a frontend to this method such as `scipy.optimize.basinhopping`
or a different library. You can simply pass a callable as the ``method``
parameter.
The callable is called as ``method(fun, x0, args, **kwargs, **options)``
where ``kwargs`` corresponds to any other parameters passed to `minimize`
(such as `callback`, `hess`, etc.), except the `options` dict, which has
its contents also passed as `method` parameters pair by pair. Also, if
`jac` has been passed as a bool type, `jac` and `fun` are mangled so that
`fun` returns just the function values and `jac` is converted to a function
returning the Jacobian. The method shall return an ``OptimizeResult``
object.
The provided `method` callable must be able to accept (and possibly ignore)
arbitrary parameters; the set of parameters accepted by `minimize` may
expand in future versions and then these parameters will be passed to
the method. You can find an example in the scipy.optimize tutorial.
.. versionadded:: 0.11.0
References
----------
.. [1] Nelder, J A, and R Mead. 1965\. A Simplex Method for Function
Minimization. The Computer Journal 7: 308-13.
.. [2] Wright M H. 1996\. Direct search methods: Once scorned, now
respectable, in Numerical Analysis 1995: Proceedings of the 1995
Dundee Biennial Conference in Numerical Analysis (Eds. D F
Griffiths and G A Watson). Addison Wesley Longman, Harlow, UK.
191-208.
.. [3] Powell, M J D. 1964\. An efficient method for finding the minimum of
a function of several variables without calculating derivatives. The
Computer Journal 7: 155-162.
.. [4] Press W, S A Teukolsky, W T Vetterling and B P Flannery.
Numerical Recipes (any edition), Cambridge University Press.
.. [5] Nocedal, J, and S J Wright. 2006\. Numerical Optimization.
Springer New York.
.. [6] Byrd, R H and P Lu and J. Nocedal. 1995\. A Limited Memory
Algorithm for Bound Constrained Optimization. SIAM Journal on
Scientific and Statistical Computing 16 (5): 1190-1208.
.. [7] Zhu, C and R H Byrd and J Nocedal. 1997\. L-BFGS-B: Algorithm
778: L-BFGS-B, FORTRAN routines for large scale bound constrained
optimization. ACM Transactions on Mathematical Software 23 (4):
550-560.
.. [8] Nash, S G. Newton-Type Minimization Via the Lanczos Method.
1984\. SIAM Journal of Numerical Analysis 21: 770-778.
.. [9] Powell, M J D. A direct search optimization method that models
the objective and constraint functions by linear interpolation.
1994\. Advances in Optimization and Numerical Analysis, eds. S. Gomez
and J-P Hennart, Kluwer Academic (Dordrecht), 51-67.
.. [10] Powell M J D. Direct search algorithms for optimization
calculations. 1998\. Acta Numerica 7: 287-336.
.. [11] Powell M J D. A view of algorithms for optimization without
derivatives. 2007.Cambridge University Technical Report DAMTP
2007/NA03
.. [12] Kraft, D. A software package for sequential quadratic
programming. 1988\. Tech. Rep. DFVLR-FB 88-28, DLR German Aerospace
Center -- Institute for Flight Mechanics, Koln, Germany.
Examples
--------
Let us consider the problem of minimizing the Rosenbrock function. This
function (and its respective derivatives) is implemented in `rosen`
(resp. `rosen_der`, `rosen_hess`) in the `scipy.optimize`.
>>> from scipy.optimize import minimize, rosen, rosen_der
A simple application of the *Nelder-Mead* method is:
>>> x0 = [1.3, 0.7, 0.8, 1.9, 1.2]
>>> res = minimize(rosen, x0, method='Nelder-Mead')
>>> res.x
[ 1\. 1\. 1\. 1\. 1.]
Now using the *BFGS* algorithm, using the first derivative and a few
options:
>>> res = minimize(rosen, x0, method='BFGS', jac=rosen_der,
... options={'gtol': 1e-6, 'disp': True})
Optimization terminated successfully.
Current function value: 0.000000
Iterations: 52
Function evaluations: 64
Gradient evaluations: 64
>>> res.x
[ 1\. 1\. 1\. 1\. 1.]
>>> print res.message
Optimization terminated successfully.
>>> res.hess
[[ 0.00749589 0.01255155 0.02396251 0.04750988 0.09495377]
[ 0.01255155 0.02510441 0.04794055 0.09502834 0.18996269]
[ 0.02396251 0.04794055 0.09631614 0.19092151 0.38165151]
[ 0.04750988 0.09502834 0.19092151 0.38341252 0.7664427 ]
[ 0.09495377 0.18996269 0.38165151 0.7664427 1.53713523]]
Next, consider a minimization problem with several constraints (namely
Example 16.4 from [5]_). The objective function is:
>>> fun = lambda x: (x[0] - 1)**2 + (x[1] - 2.5)**2
There are three constraints defined as:
>>> cons = ({'type': 'ineq', 'fun': lambda x: x[0] - 2 * x[1] + 2},
... {'type': 'ineq', 'fun': lambda x: -x[0] - 2 * x[1] + 6},
... {'type': 'ineq', 'fun': lambda x: -x[0] + 2 * x[1] + 2})
And variables must be positive, hence the following bounds:
>>> bnds = ((0, None), (0, None))
The optimization problem is solved using the SLSQP method as:
>>> res = minimize(fun, (2, 0), method='SLSQP', bounds=bnds,
... constraints=cons)
It should converge to the theoretical solution (1.4 ,1.7).
默认没有约束时,使用的是 BFGS 方法。
利用 callback
参数查看迭代的历史:
In [12]:
x0 = [-1.5, 4.5]
xi = [x0]
result = minimize(rosen, x0, callback=xi.append)
xi = np.asarray(xi)
print xi.shape
print result.x
print "in {} function evaluations.".format(result.nfev)
(37L, 2L)
[ 1\. 1.]
in 200 function evaluations.
绘图显示轨迹:
In [13]:
x, y = meshgrid(np.linspace(-2.3,1.75,25), np.linspace(-0.5,4.5,25))
z = rosen([x,y])
fig = figure(figsize=(12,5.5))
ax = fig.gca(projection="3d"); ax.azim = 70; ax.elev = 75
ax.set_xlabel("X"); ax.set_ylabel("Y"); ax.set_zlim((0,1000))
p = ax.plot_surface(x,y,z,rstride=1, cstride=1, cmap=cm.jet)
intermed = ax.plot(xi[:,0], xi[:,1], rosen(xi.T), "g-o")
rosen_min = ax.plot([1],[1],[0],"ro")
https://www.wenjiangs.com/wp-content/uploads/2022/docimg20/a40My4pXVYry4ZsM-mado6n.png alt="">
BFGS
需要计算函数的 Jacobian 矩阵:
给定 $\left[y_1,y_2,y_3\right] = f(x_0, x_1, x_2)$
$$J=\left[ \begin{matrix} \frac{\partial y_1}{\partial x_0} & \frac{\partial y_1}{\partial x_1} & \frac{\partial y_1}{\partial x_2} \\ \frac{\partial y_2}{\partial x_0} & \frac{\partial y_2}{\partial x_1} & \frac{\partial y_2}{\partial x_2} \\ \frac{\partial y_3}{\partial x_0} & \frac{\partial y_3}{\partial x_1} & \frac{\partial y_3}{\partial x_2} \end{matrix} \right]$$
在我们的例子中
$$J= \left[ \begin{matrix}\frac{\partial rosen}{\partial x_0} & \frac{\partial rosen}{\partial x_1} \end{matrix} \right] $$
导入 rosen
函数的 Jacobian
函数 rosen_der
:
In [14]:
from scipy.optimize import rosen_der
此时,我们将 Jacobian
矩阵作为参数传入:
In [15]:
xi = [x0]
result = minimize(rosen, x0, jac=rosen_der, callback=xi.append)
xi = np.asarray(xi)
print xi.shape
print "in {} function evaluations and {} jacobian evaluations.".format(result.nfev, result.njev)
(38L, 2L)
in 49 function evaluations and 49 jacobian evaluations.
可以看到,函数计算的开销大约减少了一半,迭代路径与上面的基本吻合:
In [16]:
x, y = meshgrid(np.linspace(-2.3,1.75,25), np.linspace(-0.5,4.5,25))
z = rosen([x,y])
fig = figure(figsize=(12,5.5))
ax = fig.gca(projection="3d"); ax.azim = 70; ax.elev = 75
ax.set_xlabel("X"); ax.set_ylabel("Y"); ax.set_zlim((0,1000))
p = ax.plot_surface(x,y,z,rstride=1, cstride=1, cmap=cm.jet)
intermed = ax.plot(xi[:,0], xi[:,1], rosen(xi.T), "g-o")
rosen_min = ax.plot([1],[1],[0],"ro")
https://www.wenjiangs.com/wp-content/uploads/2022/docimg20/n50qm4TaN2lRITJl-7tVbja.png alt="">
Nelder-Mead Simplex 算法
改变 minimize
使用的算法,使用 Nelder–Mead 单纯形算法:
In [17]:
xi = [x0]
result = minimize(rosen, x0, method="nelder-mead", callback = xi.append)
xi = np.asarray(xi)
print xi.shape
print "Solved the Nelder-Mead Simplex method with {} function evaluations.".format(result.nfev)
(120L, 2L)
Solved the Nelder-Mead Simplex method with 226 function evaluations.
In [18]:
x, y = meshgrid(np.linspace(-1.9,1.75,25), np.linspace(-0.5,4.5,25))
z = rosen([x,y])
fig = figure(figsize=(12,5.5))
ax = fig.gca(projection="3d"); ax.azim = 70; ax.elev = 75
ax.set_xlabel("X"); ax.set_ylabel("Y"); ax.set_zlim((0,1000))
p = ax.plot_surface(x,y,z,rstride=1, cstride=1, cmap=cm.jet)
intermed = ax.plot(xi[:,0], xi[:,1], rosen(xi.T), "g-o")
rosen_min = ax.plot([1],[1],[0],"ro")
https://www.wenjiangs.com/wp-content/uploads/2022/docimg20/DCBbLF4I41jg8x5C-C8VEzF.png alt="">
Powell 算法
使用 Powell 算法
In [19]:
xi = [x0]
result = minimize(rosen, x0, method="powell", callback=xi.append)
xi = np.asarray(xi)
print xi.shape
print "Solved Powell's method with {} function evaluations.".format(result.nfev)
(31L, 2L)
Solved Powell's method with 855 function evaluations.
In [20]:
x, y = meshgrid(np.linspace(-2.3,1.75,25), np.linspace(-0.5,4.5,25))
z = rosen([x,y])
fig = figure(figsize=(12,5.5))
ax = fig.gca(projection="3d"); ax.azim = 70; ax.elev = 75
ax.set_xlabel("X"); ax.set_ylabel("Y"); ax.set_zlim((0,1000))
p = ax.plot_surface(x,y,z,rstride=1, cstride=1, cmap=cm.jet)
intermed = ax.plot(xi[:,0], xi[:,1], rosen(xi.T), "g-o")
rosen_min = ax.plot([1],[1],[0],"ro")
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